Pyruvate decarboxylase from Acetobacter pasteurianus

Enzyme Description

Extremophile
No
EC Number

Sequence

Length: 558 amino acids
MTYTVGMYLAERLVQIGLKHHFAVAGDYNLVLLDQLLLNKDMKQIYCCNELNCGFSAEGYARSNGAAAAVVTFSVGAISAMNALGGAYAENLPVILISGAPNSNDQGTGHILHHTIGKTDYSYQLEMARQVTCAAESITDAHSAPAKIDHVIRTALRERKPAYLDIACNIASEPCVRPGPVSSLLSEPEIDHTSLKAAVDATVALLEKSASPVMLLGSKLRAANALAATETLADKLQCAVTIMAAAKGFFPEDHAGFRGLYWGEVSNPGVQELVETSDALLCIAPVFNDYSTVGWSAWPKGPNVILAEPDRVTVDGRAYDGFTLRAFLQALAEKAPARPASAQKSSVPTCSLTATSDEAGLTNDEIVRHINALLTSNTTLVAETGDSWFNAMRMTLPRGARVELEMQWGHIGWSVPSAFGNAMGSQDRQHVVMVGDGSFQLTAQEVAQMVRYELPVIIFLINNRGYVIEIAIHDGPYNYIKNWDYAGLMEVFNAGEGHGLGLKATTPKELTEAIARAKANTRGPTLIECQIDRTDCTDMLVQWGRKVASTNARKTTLA
Samuel Sutiono et al. (2019) β€” To beat the heat–engineering of the most thermostable pyruvate decarboxylase to date
RSC Advances  Β· doi:10.1039/c9ra06251c β†—  Β· Stability - Incubation
59 measurements
Database ID
Sequence Annotation
Explicit - Provided
Protein Source
Recombinant, host bacterium Escherichia coli BL21 (DE3)

Experimental Data (59 measurements)

59 measurements β€” page 2 of 3
Mutation Property Assay Solvent Solvent Volume Aqueous ReferenceWT Reference Measured Value Units Extraction method Data type Solution pH Temperature Substrate(s) Product(s) Cofactor(s) Shaking Comments
WT Stability - Incubation Activity after incubation (1 hour at 50Β°C), measured by absorbance spectrophotometry (change in pyruvate absorbance measurement, 315 nm) in aqueous phase 1-Butanol 8 % v/v 100 β€” 3 % Digital Continuous Incubation: 50 mM phosphate buffer, Assay: 50 mM phosphate buffer Incubation: 6.5, Assay: 6.5 Incubation: 50Β°C, Assay: 25Β°C 25 mM Pyruvate Acetaldehyde , Carbon Dioxide (CO2) Incubation: 0.1 mM TDP, 5 mM MgSOβ‚„, Assay: 0.1 mM TDP, 5 mM MgSOβ‚„ β€” Non-incubated control (in %), assay in aqueous phase | Clear about assay in aqueous conditions/Explicit protein sequence given corresponds to UniProt A0A4Y3TS39 which is annotated as for a protein from Acetobacter peroxydans
WT Stability - Incubation Activity after incubation (1 hour at 50Β°C), measured by absorbance spectrophotometry (change in pyruvate absorbance measurement, 315 nm) in aqueous phase 1-Butanol 7 % v/v 100 β€” 3 % Digital Continuous Incubation: 50 mM phosphate buffer, Assay: 50 mM phosphate buffer Incubation: 6.5, Assay: 6.5 Incubation: 50Β°C, Assay: 25Β°C 25 mM Pyruvate Acetaldehyde , Carbon Dioxide (CO2) Incubation: 0.1 mM TDP, 5 mM MgSOβ‚„, Assay: 0.1 mM TDP, 5 mM MgSOβ‚„ β€” Non-incubated control (in %), assay in aqueous phase | Clear about assay in aqueous conditions/Explicit protein sequence given corresponds to UniProt A0A4Y3TS39 which is annotated as for a protein from Acetobacter peroxydans
WT Stability - Incubation Activity after incubation (1 hour at 50Β°C), measured by absorbance spectrophotometry (change in pyruvate absorbance measurement, 315 nm) in aqueous phase 1-Butanol 6 % v/v 100 β€” 22 % Digital Continuous Incubation: 50 mM phosphate buffer, Assay: 50 mM phosphate buffer Incubation: 6.5, Assay: 6.5 Incubation: 50Β°C, Assay: 25Β°C 25 mM Pyruvate Acetaldehyde , Carbon Dioxide (CO2) Incubation: 0.1 mM TDP, 5 mM MgSOβ‚„, Assay: 0.1 mM TDP, 5 mM MgSOβ‚„ β€” Non-incubated control (in %), assay in aqueous phase | Clear about assay in aqueous conditions/Explicit protein sequence given corresponds to UniProt A0A4Y3TS39 which is annotated as for a protein from Acetobacter peroxydans
WT Stability - Incubation Activity after incubation (1 hour at 50Β°C), measured by absorbance spectrophotometry (change in pyruvate absorbance measurement, 315 nm) in aqueous phase 1-Butanol 5 % v/v 100 β€” 70 % Digital Continuous Incubation: 50 mM phosphate buffer, Assay: 50 mM phosphate buffer Incubation: 6.5, Assay: 6.5 Incubation: 50Β°C, Assay: 25Β°C 25 mM Pyruvate Acetaldehyde , Carbon Dioxide (CO2) Incubation: 0.1 mM TDP, 5 mM MgSOβ‚„, Assay: 0.1 mM TDP, 5 mM MgSOβ‚„ β€” Non-incubated control (in %), assay in aqueous phase | Clear about assay in aqueous conditions/Explicit protein sequence given corresponds to UniProt A0A4Y3TS39 which is annotated as for a protein from Acetobacter peroxydans
WT Stability - Incubation Activity after incubation (1 hour at 50Β°C), measured by absorbance spectrophotometry (change in pyruvate absorbance measurement, 315 nm) in aqueous phase 1-Butanol 4 % v/v 100 β€” 86 % Digital Continuous Incubation: 50 mM phosphate buffer, Assay: 50 mM phosphate buffer Incubation: 6.5, Assay: 6.5 Incubation: 50Β°C, Assay: 25Β°C 25 mM Pyruvate Acetaldehyde , Carbon Dioxide (CO2) Incubation: 0.1 mM TDP, 5 mM MgSOβ‚„, Assay: 0.1 mM TDP, 5 mM MgSOβ‚„ β€” Non-incubated control (in %), assay in aqueous phase | Clear about assay in aqueous conditions/Explicit protein sequence given corresponds to UniProt A0A4Y3TS39 which is annotated as for a protein from Acetobacter peroxydans
WT Stability - Incubation Activity after incubation (1 hour at 50Β°C), measured by absorbance spectrophotometry (change in pyruvate absorbance measurement, 315 nm) in aqueous phase 1-Butanol 3 % v/v 100 β€” 95 % Digital Continuous Incubation: 50 mM phosphate buffer, Assay: 50 mM phosphate buffer Incubation: 6.5, Assay: 6.5 Incubation: 50Β°C, Assay: 25Β°C 25 mM Pyruvate Acetaldehyde , Carbon Dioxide (CO2) Incubation: 0.1 mM TDP, 5 mM MgSOβ‚„, Assay: 0.1 mM TDP, 5 mM MgSOβ‚„ β€” Non-incubated control (in %), assay in aqueous phase | Clear about assay in aqueous conditions/Explicit protein sequence given corresponds to UniProt A0A4Y3TS39 which is annotated as for a protein from Acetobacter peroxydans
WT Stability - Incubation Activity after incubation (1 hour at 50Β°C), measured by absorbance spectrophotometry (change in pyruvate absorbance measurement, 315 nm) in aqueous phase 1-Butanol 2 % v/v 100 β€” 94 % Digital Continuous Incubation: 50 mM phosphate buffer, Assay: 50 mM phosphate buffer Incubation: 6.5, Assay: 6.5 Incubation: 50Β°C, Assay: 25Β°C 25 mM Pyruvate Acetaldehyde , Carbon Dioxide (CO2) Incubation: 0.1 mM TDP, 5 mM MgSOβ‚„, Assay: 0.1 mM TDP, 5 mM MgSOβ‚„ β€” Non-incubated control (in %), assay in aqueous phase | Clear about assay in aqueous conditions/Explicit protein sequence given corresponds to UniProt A0A4Y3TS39 which is annotated as for a protein from Acetobacter peroxydans
WT Stability - Incubation Activity after incubation (1 hour at 50Β°C), measured by absorbance spectrophotometry (change in pyruvate absorbance measurement, 315 nm) in aqueous phase 1-Butanol 0.5 % v/v 100 β€” 99 % Digital Continuous Incubation: 50 mM phosphate buffer, Assay: 50 mM phosphate buffer Incubation: 6.5, Assay: 6.5 Incubation: 50Β°C, Assay: 25Β°C 25 mM Pyruvate Acetaldehyde , Carbon Dioxide (CO2) Incubation: 0.1 mM TDP, 5 mM MgSOβ‚„, Assay: 0.1 mM TDP, 5 mM MgSOβ‚„ β€” Non-incubated control (in %), assay in aqueous phase | Clear about assay in aqueous conditions/Explicit protein sequence given corresponds to UniProt A0A4Y3TS39 which is annotated as for a protein from Acetobacter peroxydans
L84I/A100S/S103T/Q106Y/K118T/S122N/A128V/R129K/Q130H/T139V/D140S/H142E/S143E/L441V Stability - Incubation Activity after incubation (1 hour at 50Β°C), measured by absorbance spectrophotometry (change in pyruvate absorbance measurement, 315 nm) in aqueous phase Ethanol 15 % v/v 100 β€” 107 % Digital Continuous Incubation: 50 mM phosphate buffer, Assay: 50 mM phosphate buffer Incubation: 6.5, Assay: 6.5 Incubation: 50Β°C, Assay: 25Β°C 25 mM Pyruvate Acetaldehyde , Carbon Dioxide (CO2) Incubation: 0.1 mM TDP, 5 mM MgSOβ‚„, Assay: 0.1 mM TDP, 5 mM MgSOβ‚„ β€” Non-incubated control (in %), assay in aqueous phase | Clear about assay in aqueous conditions/Explicit protein sequence given corresponds to UniProt A0A4Y3TS39 which is annotated as for a protein from Acetobacter peroxydans
L84I/A100S/S103T/Q106Y/K118T/S122N/A128V/R129K/Q130H/T139V/D140S/H142E/S143E/L441V Stability - Incubation Activity after incubation (1 hour at 60Β°C), measured by absorbance spectrophotometry (change in pyruvate absorbance measurement, 315 nm) in aqueous phase 1-Butanol 9 % v/v 100 2 6 % Digital Continuous Incubation: 50 mM phosphate buffer, Assay: 50 mM phosphate buffer Incubation: 6.5, Assay: 6.5 Incubation: 60Β°C, Assay: 25Β°C 25 mM Pyruvate Acetaldehyde , Carbon Dioxide (CO2) Incubation: 0.1 mM TDP, 5 mM MgSOβ‚„, Assay: 0.1 mM TDP, 5 mM MgSOβ‚„ β€” Non-incubated control (in %), assay in aqueous phase | Clear about assay in aqueous conditions/Explicit protein sequence given corresponds to UniProt A0A4Y3TS39 which is annotated as for a protein from Acetobacter peroxydans
L84I/A100S/S103T/Q106Y/K118T/S122N/A128V/R129K/Q130H/T139V/D140S/H142E/S143E/L441V Stability - Incubation Activity after incubation (1 hour at 50Β°C), measured by absorbance spectrophotometry (change in pyruvate absorbance measurement, 315 nm) in aqueous phase Ethanol 10 % v/v 100 β€” 105 % Digital Continuous Incubation: 50 mM phosphate buffer, Assay: 50 mM phosphate buffer Incubation: 6.5, Assay: 6.5 Incubation: 50Β°C, Assay: 25Β°C 25 mM Pyruvate Acetaldehyde , Carbon Dioxide (CO2) Incubation: 0.1 mM TDP, 5 mM MgSOβ‚„, Assay: 0.1 mM TDP, 5 mM MgSOβ‚„ β€” Non-incubated control (in %), assay in aqueous phase | Clear about assay in aqueous conditions/Explicit protein sequence given corresponds to UniProt A0A4Y3TS39 which is annotated as for a protein from Acetobacter peroxydans
L84I/A100S/S103T/Q106Y/K118T/S122N/A128V/R129K/Q130H/T139V/D140S/H142E/S143E/L441V Stability - Incubation Activity after incubation (1 hour at 50Β°C), measured by absorbance spectrophotometry (change in pyruvate absorbance measurement, 315 nm) in aqueous phase Ethanol 5 % v/v 100 β€” 102 % Digital Continuous Incubation: 50 mM phosphate buffer, Assay: 50 mM phosphate buffer Incubation: 6.5, Assay: 6.5 Incubation: 50Β°C, Assay: 25Β°C 25 mM Pyruvate Acetaldehyde , Carbon Dioxide (CO2) Incubation: 0.1 mM TDP, 5 mM MgSOβ‚„, Assay: 0.1 mM TDP, 5 mM MgSOβ‚„ β€” Non-incubated control (in %), assay in aqueous phase | Clear about assay in aqueous conditions/Explicit protein sequence given corresponds to UniProt A0A4Y3TS39 which is annotated as for a protein from Acetobacter peroxydans
L84I/A100S/S103T/Q106Y/K118T/S122N/A128V/R129K/Q130H/T139V/D140S/H142E/S143E/L441V Stability - Incubation Activity after incubation (1 hour at 50Β°C), measured by absorbance spectrophotometry (change in pyruvate absorbance measurement, 315 nm) in aqueous phase Ethanol 18 % v/v 100 β€” 109 % Digital Continuous Incubation: 50 mM phosphate buffer, Assay: 50 mM phosphate buffer Incubation: 6.5, Assay: 6.5 Incubation: 50Β°C, Assay: 25Β°C 25 mM Pyruvate Acetaldehyde , Carbon Dioxide (CO2) Incubation: 0.1 mM TDP, 5 mM MgSOβ‚„, Assay: 0.1 mM TDP, 5 mM MgSOβ‚„ β€” Non-incubated control (in %), assay in aqueous phase | Clear about assay in aqueous conditions/Explicit protein sequence given corresponds to UniProt A0A4Y3TS39 which is annotated as for a protein from Acetobacter peroxydans
L84I/A100S/S103T/Q106Y/K118T/S122N/A128V/R129K/Q130H/T139V/D140S/H142E/S143E/L441V Stability - Incubation Activity after incubation (1 hour at 50Β°C), measured by absorbance spectrophotometry (change in pyruvate absorbance measurement, 315 nm) in aqueous phase Ethanol 20 % v/v 100 74 109 % Digital Continuous Incubation: 50 mM phosphate buffer, Assay: 50 mM phosphate buffer Incubation: 6.5, Assay: 6.5 Incubation: 50Β°C, Assay: 25Β°C 25 mM Pyruvate Acetaldehyde , Carbon Dioxide (CO2) Incubation: 0.1 mM TDP, 5 mM MgSOβ‚„, Assay: 0.1 mM TDP, 5 mM MgSOβ‚„ β€” Non-incubated control (in %), assay in aqueous phase | Clear about assay in aqueous conditions/Explicit protein sequence given corresponds to UniProt A0A4Y3TS39 which is annotated as for a protein from Acetobacter peroxydans
L84I/A100S/S103T/Q106Y/K118T/S122N/A128V/R129K/Q130H/T139V/D140S/H142E/S143E/L441V Stability - Incubation Activity after incubation (1 hour at 50Β°C), measured by absorbance spectrophotometry (change in pyruvate absorbance measurement, 315 nm) in aqueous phase Ethanol 25 % v/v 100 β€” 108 % Digital Continuous Incubation: 50 mM phosphate buffer, Assay: 50 mM phosphate buffer Incubation: 6.5, Assay: 6.5 Incubation: 50Β°C, Assay: 25Β°C 25 mM Pyruvate Acetaldehyde , Carbon Dioxide (CO2) Incubation: 0.1 mM TDP, 5 mM MgSOβ‚„, Assay: 0.1 mM TDP, 5 mM MgSOβ‚„ β€” Non-incubated control (in %), assay in aqueous phase | Clear about assay in aqueous conditions/Explicit protein sequence given corresponds to UniProt A0A4Y3TS39 which is annotated as for a protein from Acetobacter peroxydans
L84I/A100S/S103T/Q106Y/K118T/S122N/A128V/R129K/Q130H/T139V/D140S/H142E/S143E/L441V Stability - Incubation Activity after incubation (1 hour at 50Β°C), measured by absorbance spectrophotometry (change in pyruvate absorbance measurement, 315 nm) in aqueous phase Ethanol 30 % v/v 100 β€” 103 % Digital Continuous Incubation: 50 mM phosphate buffer, Assay: 50 mM phosphate buffer Incubation: 6.5, Assay: 6.5 Incubation: 50Β°C, Assay: 25Β°C 25 mM Pyruvate Acetaldehyde , Carbon Dioxide (CO2) Incubation: 0.1 mM TDP, 5 mM MgSOβ‚„, Assay: 0.1 mM TDP, 5 mM MgSOβ‚„ β€” Non-incubated control (in %), assay in aqueous phase | Clear about assay in aqueous conditions/Explicit protein sequence given corresponds to UniProt A0A4Y3TS39 which is annotated as for a protein from Acetobacter peroxydans
L84I/A100S/S103T/Q106Y/K118T/S122N/A128V/R129K/Q130H/T139V/D140S/H142E/S143E/L441V Stability - Incubation Activity after incubation (1 hour at 50Β°C), measured by absorbance spectrophotometry (change in pyruvate absorbance measurement, 315 nm) in aqueous phase Ethanol 35 % v/v 100 β€” 89 % Digital Continuous Incubation: 50 mM phosphate buffer, Assay: 50 mM phosphate buffer Incubation: 6.5, Assay: 6.5 Incubation: 50Β°C, Assay: 25Β°C 25 mM Pyruvate Acetaldehyde , Carbon Dioxide (CO2) Incubation: 0.1 mM TDP, 5 mM MgSOβ‚„, Assay: 0.1 mM TDP, 5 mM MgSOβ‚„ β€” Non-incubated control (in %), assay in aqueous phase | Clear about assay in aqueous conditions/Explicit protein sequence given corresponds to UniProt A0A4Y3TS39 which is annotated as for a protein from Acetobacter peroxydans
L84I/A100S/S103T/Q106Y/K118T/S122N/A128V/R129K/Q130H/T139V/D140S/H142E/S143E/L441V Stability - Incubation Activity after incubation (1 hour at 50Β°C), measured by absorbance spectrophotometry (change in pyruvate absorbance measurement, 315 nm) in aqueous phase Ethanol 40 % v/v 100 β€” 52 % Digital Continuous Incubation: 50 mM phosphate buffer, Assay: 50 mM phosphate buffer Incubation: 6.5, Assay: 6.5 Incubation: 50Β°C, Assay: 25Β°C 25 mM Pyruvate Acetaldehyde , Carbon Dioxide (CO2) Incubation: 0.1 mM TDP, 5 mM MgSOβ‚„, Assay: 0.1 mM TDP, 5 mM MgSOβ‚„ β€” Non-incubated control (in %), assay in aqueous phase | Clear about assay in aqueous conditions/Explicit protein sequence given corresponds to UniProt A0A4Y3TS39 which is annotated as for a protein from Acetobacter peroxydans
L84I/A100S/S103T/Q106Y/K118T/S122N/A128V/R129K/Q130H/T139V/D140S/H142E/S143E/L441V Stability - Incubation Activity after incubation (1 hour at 50Β°C), measured by absorbance spectrophotometry (change in pyruvate absorbance measurement, 315 nm) in aqueous phase Ethanol 45 % v/v 100 β€” 2 % Digital Continuous Incubation: 50 mM phosphate buffer, Assay: 50 mM phosphate buffer Incubation: 6.5, Assay: 6.5 Incubation: 50Β°C, Assay: 25Β°C 25 mM Pyruvate Acetaldehyde , Carbon Dioxide (CO2) Incubation: 0.1 mM TDP, 5 mM MgSOβ‚„, Assay: 0.1 mM TDP, 5 mM MgSOβ‚„ β€” Non-incubated control (in %), assay in aqueous phase | Clear about assay in aqueous conditions/Explicit protein sequence given corresponds to UniProt A0A4Y3TS39 which is annotated as for a protein from Acetobacter peroxydans
L84I/A100S/S103T/Q106Y/K118T/S122N/A128V/R129K/Q130H/T139V/D140S/H142E/S143E/L441V Stability - Incubation Activity after incubation (1 hour at 50Β°C), measured by absorbance spectrophotometry (change in pyruvate absorbance measurement, 315 nm) in aqueous phase Ethanol 50 % v/v 100 β€” 0 % Digital Continuous Incubation: 50 mM phosphate buffer, Assay: 50 mM phosphate buffer Incubation: 6.5, Assay: 6.5 Incubation: 50Β°C, Assay: 25Β°C 25 mM Pyruvate Acetaldehyde , Carbon Dioxide (CO2) Incubation: 0.1 mM TDP, 5 mM MgSOβ‚„, Assay: 0.1 mM TDP, 5 mM MgSOβ‚„ β€” Non-incubated control (in %), assay in aqueous phase | Clear about assay in aqueous conditions/Explicit protein sequence given corresponds to UniProt A0A4Y3TS39 which is annotated as for a protein from Acetobacter peroxydans
1 2 3

Mutations in this dataset (2)

WT L84I/A100S/S103T/Q106Y/K118T/S122N/A128V/R129K/Q130H/T139V/D140S/H142E/S143E/L441V

Visualization : Stability β€” Incubation

One bar per measurement. Colour = solvent, shade = solvent volume. β€” β€” β€” Reference value. Hover for details.

Mutation Effect

Mutation impact on enzyme stability and function in the presence of organic solvent: comparison of wild-type and mutant values in identical conditions.

Structure

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